Date of Award
Master of Science (MS)
College of Science and Mathematics
Thesis Sponsor/Dissertation Chair/Project Chair
Carlos A. Molina
Sandra D. Adams
Kirsten J Monsen
Genetic engineering, Logperch--Genetics
Genome editing has become an important tool in identifying the specific function and role of a gene in an organism. With the advent of genome editing using clustered regularly interspaced short palindromic repeats (CRISPR)/ CRISPR-associated (Cas) systems, editing a gene has become much easier and less expensive. This CRISPR/Cas9 system uses a small 20 nucleotide long guided RNA (gRNA), which along with Cas9 will bind to the target site and cleave it. In this research, CRISPR/Cas9 system was used to knock out the inducible cAMP early repressor (ICER) promoter sequence in zebra fish. ICER has anti-proliferative activity and acts as a tumor suppressor. In Ras-induced melanoma, ICER protein is being targeted to degradation. Knocking out the ICER gene will help us to establish the tumorigenicity of ICER in melanomas.
A gRNA, specific towards the ICER promoter sequence was designed in an attempt to cleave it with Cas9. Plasmids pDR274(-)atgICER and pMLM3613 were used to generate gRNA and Cas9mRNA via in vitro transcriptions. To check the efficiency of designed gRNA in vitro, PAC-2 cell lines were transfected with a plasmid that expressed both gRNA and Cas9. The results demonstrate the ability of Cas9 to cleave the target sequence. In the future, this plasmid could be used to perform microinjection in zebra fish embryos with the generated gRNA and Cas9mRNA.
Gnanasekar, Madhumalini, "CRISPR/CAS9 as a Gene Editing Tool to Delete the Transcriptional Repressor Inducible cAMP Early Repressor from the Zebrafish Genome" (2014). Theses, Dissertations and Culminating Projects. 421.